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DNM1
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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Tissue proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:77.1 nTPM
GTEx:77.1 nTPM
FANTOM5:61.2 Scaled Tags Per Million
Pig:146.7 nTPM
Mouse:192.9 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 77.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 77.1
Samples: 105

Max nTPM: 156.2
Min nTPM: 21.1
Std nTPM: 27.0
Median nTPM:
243_1 75 years, male 156.2
352_1 62 years, male 131.7
218_1 71 years, female 129.9
356_1 87 years, female 122.3
506_1 65 years, male 120.3
386_1 76 years, male 117.5
163_1 78 years, male 116.3
172_1 72 years, female 116.2
379_1 60 years, male 116.0
377_1 82 years, female 110.7
237_1 82 years, male 110.5
177_1 74 years, male 108.1
349_1 83 years, male 107.9
354_1 81 years, female 107.7
353_1 82 years, female 107.3
316_1 62 years, male 106.2
229_1 69 years, female 104.8
335_1 73 years, female 104.5
293_1 68 years, female 103.7
350_1 84 years, female 103.3
452_1 88 years, female 102.6
318_1 68 years, male 102.1
355_1 70 years, female 102.1
404_1 82 years, female 101.4
319_1 81 years, male 100.4
447_1 81 years, male 100.3
322_1 76 years, male 99.6
376_1 75 years, female 98.4
321_1 62 years, female 97.1
375_1 74 years, female 96.8
292_1 71 years, male 96.7
264_1 73 years, female 95.8
517_1 88 years, male 93.2
320_1 89 years, female 92.0
425_1 59 years, female 91.6
351_1 91 years, male 90.6
251_1 78 years, male 90.5
286_1 68 years, female 90.5
6_1 73 years, female 89.3
173_1 67 years, male 88.7
405_1 91 years, male 86.5
291_1 76 years, male 85.8
480_1 63 years, male 84.0
109_1 81 years, female 83.8
406_1 79 years, male 83.3
348_1 84 years, male 82.9
396_1 62 years, male 82.7
189_1 76 years, male 82.2
347_1 72 years, male 81.3
295_1 61 years, female 80.7
503_1 68 years, male 80.2
266_1 85 years, male 77.2
317_1 60 years, male 76.7
394_1 75 years, female 73.9
153_1 70 years, female 73.2
468_1 89 years, male 73.0
265_1 87 years, male 69.2
313_1 79 years, female 69.1
35_1 74 years, female 68.9
324_1 76 years, male 68.0
526_1 61 years, male 68.0
288_1 66 years, female 67.5
246_1 77 years, male 67.2
518_1 75 years, female 66.9
254_1 77 years, female 66.7
384_1 83 years, male 66.3
142_1 61 years, female 64.7
120_1 70 years, female 64.2
115_1 83 years, male 63.6
389_1 86 years, female 62.2
2_1 77 years, female 61.7
99_1 64 years, male 61.6
217_1 76 years, male 60.6
311_1 78 years, male 60.6
499_1 55 years, female 58.7
17_1 71 years, male 56.1
18_1 88 years, male 55.9
137_1 83 years, male 54.7
314_1 67 years, male 54.7
117_1 61 years, male 54.2
126_1 63 years, male 53.1
32_1 67 years, male 52.7
145_1 84 years, male 52.5
81_1 67 years, male 51.6
315_1 62 years, female 50.9
4_1 88 years, female 49.9
162_1 79 years, female 49.3
9_1 66 years, female 49.0
415_1 77 years, female 48.9
139_1 64 years, female 48.0
43_1 64 years, female 47.5
413_1 59 years, female 45.3
42_1 85 years, male 44.9
414_1 84 years, female 44.6
89_1 63 years, male 44.2
307_1 66 years, female 43.5
41_1 94 years, female 42.3
466_1 57 years, female 41.6
501_1 88 years, male 41.6
119_1 70 years, female 33.4
149_1 88 years, male 32.2
495_1 57 years, female 31.8
490_1 67 years, female 28.8
308_1 70 years, female 23.7
491_1 89 years, female 21.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 61.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 61.2
FF:10030-101E3 24-65 years, mixed 61.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 146.7
Pig sample Sample description nTPM
Retina
nTPM: 146.8
Samples: 4

Max nTPM: 156.9
Min nTPM: 139.2
Sample A Female 142.3
Sample B Female 148.7
Sample C Male 156.9
Sample D Male 139.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 192.9
Mouse sample Sample description nTPM
Retina
nTPM: 192.9
Samples: 4

Max nTPM: 214.1
Min nTPM: 162.1
Sample A Male 197.3
Sample B Male 214.1
Sample C Female 162.1
Sample D Female 197.9

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