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BRAIN WHITE MATTER Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
WHITE MATTER - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:34.3 nTPM
FANTOM5:28.0 Scaled Tags Per Million
Pig:11.3 nTPM
Mouse:28.8 nTPM

WHITE MATTER - HPA Brain RNA-seq
Max nTPM 34.3
Sample id Sample description nTPM
Angular gyrus (white matter)
nTPM: 16.0
1920 Male, age 76, both hemispheres 16.0
Anterior funiculus (white matter)
nTPM: 31.0
2193 Male, age 75, both hemispheres 33.9
2818 Female, age 79, both hemispheres 32.8
2819 Male, age 47, both hemispheres 30.5
2734 Male, age 80, both hemispheres 26.9
Area striata (white matter)
nTPM: 17.7
2258 Female, age 91, left hemisphere 17.7
Cerebellar white matter
nTPM: 25.7
2105 Male, age 74, right hemisphere 30.7
2773 Female, age 85, right hemisphere 29.1
1864 Male, age 80, left hemisphere 27.4
1837 Male, age 76, left hemisphere 24.0
1931 Female, age 91, left hemisphere 23.1
2174 Male, age 61, right hemisphere 19.6
Corpus callosum, genu (white matter)
nTPM: 20.3
1886 Female, age 67, right hemisphere 23.6
2771 Male, age 75, left hemisphere 22.3
1887 Male, age 76, left hemisphere 20.3
1934 Male, age 61, right hemisphere 19.1
1885 Female, age 94, left hemisphere 18.6
1849 Female, age 91, right hemisphere 18.3
Corpus callosum, splenium (white matter)
nTPM: 24.8
2104 Male, age 75, left hemisphere 28.4
2847 Female, age 67, right hemisphere 27.9
2238 Female, age 94, right hemisphere 23.4
1946 Male, age 76, left hemisphere 19.3
Dorsal funiculus (white matter)
nTPM: 34.3
2128 Male, age 75, both hemispheres 41.7
2810 Male, age 90, both hemispheres 36.8
2817 Male, age 47, both hemispheres 33.9
2812 Male, age 66, both hemispheres 29.7
2064 Female, age 79, both hemispheres 29.5
Lateral funiculus (white matter)
nTPM: 32.8
2099 Male, age 90, both hemispheres 35.4
2192 Male, age 75, both hemispheres 34.1
2094 Female, age 79, both hemispheres 32.2
2294 Male, age 66, both hemispheres 29.8
Occipital cortex (white matter)
nTPM: 20.9
2259 Male, age 75, midline 22.0
2257 Female, age 67, both hemispheres 19.8
Parahippocampal cortex (white matter)
nTPM: 18.3
2157 Female, age 91, both hemispheres 18.3
Parieto-temporal junction (white matter)
nTPM: 25.8
1935 Female, age 94, right hemisphere 34.7
1999 Female, age 67, right hemisphere 27.5
2469 Male, age 75, right hemisphere 26.1
2121 Male, age 76, left hemisphere 23.2
2774 Male, age 61, right hemisphere 21.9
2770 Female, age 91, right hemisphere 21.2
Somatomor cortex, precentral gyrus (white matter)
nTPM: 17.2
2439 Male, age 75, right hemisphere 17.2
Somatosensory cortex, postcentral gyrus, ventral (white matter)
nTPM: 19.5
2623 Male, age 75, right hemisphere 19.5
Temporal white matter
nTPM: 23.2
2736 Female, age 91, right hemisphere 28.0
2254 Male, age 75, right hemisphere 26.0
2524 Female, age 85, left hemisphere 21.4
2523 Female, age 94, left hemisphere 20.8
1801 Male, age 76, left hemisphere 19.6

WHITE MATTER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 28.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Corpus callosum
Scaled Tags Per Million: 28.0
FF:10042-101F6 24-68 years, mixed 28.0

WHITE MATTER - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 11.3
Pig sample Sample description nTPM
Corpus callosum
nTPM: 11.3
Samples: 4

Max nTPM: 12.5
Min nTPM: 10.4
Sample A Female 10.9
Sample B Female 10.4
Sample C Male 12.5
Sample D Male 11.4

WHITE MATTER - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 28.8
Mouse sample Sample description nTPM
Corpus callosum
nTPM: 28.8
Samples: 3

Max nTPM: 29.5
Min nTPM: 28.2
Sample A Male 29.5
Sample B Male 28.2
Sample D Female 28.6

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