BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.1 nTPM
HPA Brain:140.4 nTPM
GTEx:16.1 nTPM
FANTOM5:261.1 Scaled Tags Per Million
Pig:104.0 nTPM
Mouse:68.4 nTPM
Allen mouse:6.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 140.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 90.3
2288 Male, age 75, left hemisphere 118.3
2846 Female, age 79, unknown 113.2
1781 Male, age 74, unknown 98.1
2290 Female, age 72, unknown 85.9
1854 Male, age 80, left hemisphere 82.5
1857 Female, age 85, left hemisphere 79.7
2481 Female, age 94, left hemisphere 72.4
2289 Male, age 61, right hemisphere 72.2
Globus pallidus, externus
nTPM: 126.6
2567 Female, age 72, unknown 154.7
2395 Male, age 75, both hemispheres 133.0
2772 Female, age 79, unknown 129.4
1996 Male, age 80, right hemisphere 115.1
2646 Male, age 61, right hemisphere 100.7
Globus pallidus, internus
nTPM: 140.4
2287 Male, age 75, right hemisphere 165.9
2111 Female, age 85, right hemisphere 162.6
2566 Female, age 72, unknown 159.8
2778 Female, age 91, both hemispheres 156.8
1818 Male, age 74, unknown 125.8
2037 Male, age 80, right hemisphere 116.1
2483 Female, age 94, right hemisphere 95.8
Nucleus accumbens
nTPM: 102.6
2391 Female, age 94, left hemisphere 134.0
2698 Female, age 72, unknown 118.3
2286 Male, age 75, left hemisphere 105.7
1856 Female, age 91, right hemisphere 100.6
2824 Male, age 61, right hemisphere 98.8
2732 Male, age 80, right hemisphere 92.0
1783 Male, age 74, unknown 89.8
1806 Female, age 85, left hemisphere 81.7
Nucleus basalis of Meynert
nTPM: 94.0
2821 Male, age 75, both hemispheres 110.3
2393 Male, age 80, right hemisphere 92.8
2484 Female, age 94, left hemisphere 90.9
2569 Male, age 61, both hemispheres 81.8
Nucleus of the diagonal band
nTPM: 97.4
1812 Female, age 91, both hemispheres 102.5
2029 Male, age 61, right hemisphere 102.1
2775 Male, age 80, right hemisphere 97.7
2195 Female, age 85, both hemispheres 93.9
1979 Male, age 74, unknown 90.6
Putamen
nTPM: 104.9
2647 Male, age 75, left hemisphere 116.5
1829 Male, age 74, unknown 115.9
1937 Female, age 91, right hemisphere 111.7
2466 Female, age 79, unknown 111.6
2489 Female, age 72, unknown 100.2
2482 Female, age 94, left hemisphere 91.1
1838 Male, age 80, right hemisphere 87.5
Septal nuclei
nTPM: 94.5
2394 Male, age 61, left hemisphere 116.4
2629 Female, age 94, right hemisphere 108.0
2009 Female, age 91, both hemispheres 93.3
2031 Female, age 72, unknown 91.9
2199 Male, age 80, right hemisphere 87.8
1960 Male, age 74, unknown 87.0
2059 Female, age 85, both hemispheres 77.0
Stria terminalis, bed nucleus
nTPM: 112.1
1974 Female, age 91, both hemispheres 125.3
2201 Male, age 74, unknown 115.4
2486 Female, age 94, both hemispheres 95.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 15.1
Samples: 246

Max nTPM: 41.9
Min nTPM: 4.7
Std nTPM: 5.3
Median nTPM: 14.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 41.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 31.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 31.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 31.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 30.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 28.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 27.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 25.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 24.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 23.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 23.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.8
Samples: 246

Max nTPM: 32.3
Min nTPM: 4.1
Std nTPM: 4.7
Median nTPM: 13.6
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 32.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 30.7
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 30.1
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 28.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 27.3
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 25.6
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 24.9
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 24.7
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 24.2
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 21.6
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 21.5
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Brain - Putamen (basal ganglia)
Average nTPM: 16.1
Samples: 205

Max nTPM: 34.2
Min nTPM: 4.4
Std nTPM: 5.6
Median nTPM: 15.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 34.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 33.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 31.1
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 30.5
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 29.3
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 28.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 28.4
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 28.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 27.9
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 27.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 27.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 261.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 131.4
FF:10164-103B2 76 years, female 131.4
Nucleus accumbens
Scaled Tags Per Million: 261.1
FF:10037-101F1 23-56 years, mixed 261.1
Putamen
Scaled Tags Per Million: 166.8
FF:10176-103C5 60 years, female 166.8
Globus pallidus
Scaled Tags Per Million: 204.1
FF:10175-103C4 60 years, female 218.1
FF:10161-103A8 76 years, female 190.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 104.0
Pig sample Sample description nTPM
Caudate
nTPM: 74.4
Samples: 4

Max nTPM: 85.0
Min nTPM: 66.5
Sample A Female 66.5
Sample B Female 69.8
Sample C Male 85.0
Sample D Male 76.1
Putamen
nTPM: 104.1
Samples: 4

Max nTPM: 127.1
Min nTPM: 79.7
Sample A Female 104.4
Sample B Female 79.7
Sample C Male 127.1
Sample D Male 105.0
Septum
nTPM: 79.4
Samples: 4

Max nTPM: 122.8
Min nTPM: 56.1
Sample A Female 62.3
Sample B Female 56.1
Sample C Male 122.8
Sample D Male 76.2
Ventral pallidum
nTPM: 82.4
Samples: 4

Max nTPM: 133.0
Min nTPM: 55.4
Sample A Female 55.4
Sample B Female 63.0
Sample C Male 133.0
Sample D Male 78.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 68.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 53.4
Samples: 4

Max nTPM: 60.0
Min nTPM: 48.5
Sample A Male 60.0
Sample B Male 55.7
Sample C Female 49.3
Sample D Female 48.5
Septum
nTPM: 68.4
Samples: 4

Max nTPM: 74.2
Min nTPM: 61.3
Sample A Male 70.3
Sample B Male 67.9
Sample C Female 61.3
Sample D Female 74.2
Ventral forebrain
nTPM: 53.7
Samples: 4

Max nTPM: 69.7
Min nTPM: 47.9
Sample A Male 47.9
Sample B Male 69.7
Sample C Female 48.6
Sample D Female 48.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.2
74641219 Antisense, RP_060220_05_G09, Mouse strain C57BL/6J (56 days, male) 8.3
69134426 Antisense, RP_050321_02_H06, Mouse strain C57BL/6J (56 days, male) 6.2
71209892 Antisense, RP_050810_03_A05, Mouse strain C57BL/6J (56 days, male) 1.0
Pallidum
Expression energy: 6.2
74641219 Antisense, RP_060220_05_G09, Mouse strain C57BL/6J (56 days, male) 10.4
69134426 Antisense, RP_050321_02_H06, Mouse strain C57BL/6J (56 days, male) 6.1
71209892 Antisense, RP_050810_03_A05, Mouse strain C57BL/6J (56 days, male) 2.2

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