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ZNF587
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  • ZNF587
INTERACTION
Protein interactions
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ZNF587
Gene descriptioni

Full gene name according to HGNC.

Zinc finger protein 587
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Transcription factors
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

2
HUMAN PROTEIN ATLAS INFORMATIONi

Summary of data presented in the Tissue section, with a representative image of protein expression (left) and an interactive chart showing the tissue-specific mRNA expression (right). The image and the chart are clickable and will redirect to more Tissue data.
This section contains information regarding the expression profiles of protein-coding genes in normal human tissue, both on the mRNA and protein level. The protein expression data is derived from antibody-based protein profiling using immunohistochemistry.

Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Stomach - Proteolysis (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Low tissue specificity
Tau specificity score (RNA)i

Tau specificity score is a numerical indicator of the specificity of the gene expression across cells or tissues. The value ranges from 0 and 1, where 0 indicates identical expression across all cells/tissue types, while 1 indicates expression in a single cell/tissue type.

0.24
Tissue distribution (RNA)i

The RNA distribution category is based on mRNA expression levels in the analyzed samples based on a combination of data from HPA and GTEX. The categories include: detected in all, detected in many, detected in some, detected in single and not detected.

Detected in all
Protein evidencei

Evidence score for genes based on UniProt protein existence (UniProt evidence); neXtProt protein existence (neXtProt evidence);and a Human Protein Atlas antibody- or RNA based score (HPA evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable.

Read more
Evidence at protein level
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Localized to the Nucleoplasm In addition localized to the Nucleoli
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.

Not available
INTERACTION SUMMARYi

In the Interaction summary a network plot of the gene's interaction partners is shown with nodes representing genes and edges representing the interaction type and the confidence (MI score) for the interaction. The type of interaction (direct interaction or physical association) is reflected by the colour of the edges, while the confidence of the interaction is reflected by the thickness of the edges. Scores larger than 0.6 (high confidence) have a thicker line than scores between 0.45 and 0.6 (medium confidence).

The highlight bar in the top of the plot can be used to colour the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass.

Nodes can also be highlighted using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Highlight:
Off
Subcell location
Predicted location
Tissue specificity
Protein class

Filter menu »
Fields »
e.g. Brain enriched, Localized to mitochondria, Stomach - Proteolysis

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Cluster
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Interacting gene
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


Number of interactions: 102 View all protein interaction data in IntAct
Interaction Interaction type Confidence MI score # Interactions
CEP44 Physical association High 0.72 40
CEP70 Physical association High 0.72 196
FSD2 Physical association High 0.72 73
KRT40 Physical association High 0.72 288
KRTAP10-5 Physical association High 0.72 115
KRTAP10-7 Physical association High 0.72 239
KRTAP10-8 Physical association High 0.72 325
KRTAP10-9 Physical association High 0.72 182
KRTAP5-9 Physical association High 0.72 166
MDFI Physical association High 0.72 277
PNMA2 Physical association High 0.72 29
PRPF31 Physical association High 0.72 118
STX11 Physical association High 0.72 80
TNS2 Physical association High 0.72 70
TRAF1 Physical association High 0.72 166
TRIM41 Physical association High 0.72 108
TRIM54 Physical association High 0.72 151
ZBTB8A Physical association High 0.72 58
AQP6 Physical association Medium 0.56 264
ASB15 Physical association Medium 0.56 10
ASB6 Physical association Medium 0.56 13
AXIN2 Physical association Medium 0.56 36
BEGAIN Physical association Medium 0.56 29
C17orf50 Physical association Medium 0.56 6
CARD10 Physical association Medium 0.56 83
CARD9 Physical association Medium 0.56 52
CCDC125 Physical association Medium 0.56 53
CCDC85B Physical association Medium 0.56 12
CSRNP1 Physical association Medium 0.56 9
CYSRT1 Physical association Medium 0.56 396
DHX57 Physical association Medium 0.56 18
EFEMP2 Physical association Medium 0.56 83
FHL3 Physical association Medium 0.56 103
FHL5 Physical association Medium 0.56 62
FST Physical association Medium 0.56 7
GOLGA2 Physical association Medium 0.56 349
GOLGA6L9 Physical association Medium 0.56 177
GOPC Physical association Medium 0.56 28
GSC2 Physical association Medium 0.56 46
HMBOX1 Physical association Medium 0.56 76
HSF2BP Physical association Medium 0.56 223
IGFBP6 Physical association Medium 0.56 28
IKBKG Physical association Medium 0.56 57
IKZF3 Physical association Medium 0.56 130
INSC Physical association Medium 0.56 9
KATNBL1 Physical association Medium 0.56 31
KPRP Physical association Medium 0.56 80
KRT31 Physical association Medium 0.56 284
KRT38 Physical association Medium 0.56 57
KRTAP1-1 Physical association Medium 0.56 150
KRTAP1-3 Physical association Medium 0.56 140
KRTAP10-10 Physical association Medium 0.56 18
KRTAP10-11 Physical association Medium 0.56 31
KRTAP12-2 Physical association Medium 0.56 97
KRTAP12-3 Physical association Medium 0.56 117
KRTAP2-3 Physical association Medium 0.56 9
KRTAP2-4 Physical association Medium 0.56 77
KRTAP5-7 Physical association Medium 0.56 50
LDOC1 Physical association Medium 0.56 82
LRP2BP Physical association Medium 0.56 17
LZTS1 Physical association Medium 0.56 73
MCCD1 Physical association Medium 0.56 20
MEOX2 Physical association Medium 0.56 158
MKRN3 Physical association Medium 0.56 118
MTUS2 Physical association Medium 0.56 130
MYF5 Physical association Medium 0.56 18
NDUFB7 Physical association Medium 0.56 27
NKAPL Physical association Medium 0.56 6
NOTCH2NLA Physical association Medium 0.56 190
NOTCH2NLC Physical association Medium 0.56 178
PBX2 Physical association Medium 0.56 19
PLSCR1 Physical association Medium 0.56 43
PRDM14 Physical association Medium 0.56 41
RUNDC3A Physical association Medium 0.56 15
SMYD5 Physical association Medium 0.56 2
SOX13 Physical association Medium 0.56 6
SPRED1 Physical association Medium 0.56 308
SPRY2 Physical association Medium 0.56 51
SPRY3 Physical association Medium 0.56 22
SSX2IP Physical association Medium 0.56 78
TCF4 Physical association Medium 0.56 124
TENM4 Physical association Medium 0.56 7
TFIP11 Physical association Medium 0.56 179
TRIB3 Physical association Medium 0.56 54
TRIM23 Physical association Medium 0.56 142
TRIM27 Physical association Medium 0.56 232
TRIM36 Physical association Medium 0.56 8
TRIM37 Physical association Medium 0.56 31
TSGA10 Physical association Medium 0.56 54
TXK Physical association Medium 0.56 16
VPS52 Physical association Medium 0.56 83
VWC2 Physical association Medium 0.56 51
ZBTB43 Physical association Medium 0.56 21
ZIM2 Physical association Medium 0.56 26
ZKSCAN8 Physical association Medium 0.56 14
ZNF286A Physical association Medium 0.56 13
ZNF330 Physical association Medium 0.56 43
ZNF417 Physical association Medium 0.56 140
ZNF547 Physical association Medium 0.56 7
ZNF774 Physical association Medium 0.56 68
ZNF837 Physical association Medium 0.56 68
ZRANB1 Physical association Medium 0.56 112
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METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

ZNF587 is not a metabolic protein

Contact

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


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